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X-ray Crystallography and Cryo-EM

Advanced🧪 Biotechnology & GenomicsTopic 41 of 56

Summary

Methods to determine atomic structures of biomolecules from diffraction or electron images.

In depth

Crystallography needs protein crystals and measures diffraction (DNA double helix, haemoglobin). Cryo-EM flash-freezes samples and images thousands of particles, resolving structures down to near 1.2 Å (Nobel 2017).

X-ray needs well-ordered crystals; cryo-EM can handle large, flexible complexes. Both give electron density maps into which atomic models are built. Resolution affects detail.

Key idea: structures reveal how drugs bind and how mutations alter function.

Structural biology determines the arrangement of atoms in biomolecules. In X-ray crystallography, a purified protein is crystallised and X-rays diffracted by the crystal form a pattern from which electron density and a model are calculated; it gave the structures of DNA, myoglobin and ribosomes.

In cryo-electron microscopy, samples are flash-frozen in thin ice and imaged with an electron microscope; thousands of particle images are averaged to give a 3D map, now at near-atomic resolution without crystals. Cryo-EM won the 2017 Nobel Prize and suits large complexes and membrane proteins. NMR is another method for small proteins in solution.

Example: cryo-EM showed the spike protein of SARS-CoV-2.

Use cases

Frequently asked questions

What is X-ray Crystallography and Cryo-EM?

Methods to determine atomic structures of biomolecules from diffraction or electron images.

Which area of biology covers X-ray Crystallography and Cryo-EM, and how advanced is it?

X-ray Crystallography and Cryo-EM is one of the 56 topics in Biotechnology & Genomics. It is rated Advanced, so it suits learners who want specialist depth. Related topics in this area include Protein Structure Prediction, Machine Learning in Biology, CRISPR Base and Prime Editing.

Why does X-ray Crystallography and Cryo-EM matter?

Structures guide drug design.

Can you give an example of X-ray Crystallography and Cryo-EM?

Cryo-EM revealed the spike protein of SARS-CoV-2 early in the pandemic.

What should I learn before X-ray Crystallography and Cryo-EM?

Work through the Beginner topics in Biotechnology & Genomics first, such as Biotechnology, Genetic Engineering, Selective Breeding, then return to X-ray Crystallography and Cryo-EM. Advanced topics assume the Intermediate vocabulary.

What topics are related to X-ray Crystallography and Cryo-EM?

The closest topics to X-ray Crystallography and Cryo-EM are Protein Structure Prediction, Machine Learning in Biology, CRISPR Base and Prime Editing, Functional Genomics. Comparing them side by side is a good way to see how the ideas connect.

How can I check that I understand X-ray Crystallography and Cryo-EM?

Read the summary and the in-depth section, then use the quick check on the interactive lesson for X-ray Crystallography and Cryo-EM. To practise the whole of Biotechnology & Genomics, use the Biotechnology & Genomics quiz.

How is X-ray Crystallography and Cryo-EM different from Protein Structure Prediction?

X-ray Crystallography and Cryo-EM: Methods to determine atomic structures of biomolecules from diffraction or electron images. Protein Structure Prediction: Deep-learning systems like AlphaFold predict 3D protein structures from amino acid sequences. Read both side by side and note what each one explains.

How should I study X-ray Crystallography and Cryo-EM step by step?

First, read the summary and write the definition in your own words. Second, read the in-depth section and note any example. Third, compare it with Protein Structure Prediction and explain the difference aloud. Finally, take the Biotechnology & Genomics quiz and come back to this page for any question you miss.

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